1 | background
2 | questions
3 | approaches
4 | methods
5 | results
6 | future
7 | conclusions
Cercocarpus
March 1st, ’23
1 | background
2 | questions
3 | approaches
4 | methods
5 | results
6 | future
7 | conclusions
Cercocarpus
Jane Ogilvie (ecological fieldwork, design)
Emily J. Woodworth (pollen morphology, and microscopy)
Sophie Taddeo (geo-spatial, statistics)
Paul CaraDonna (little bees/big picture(s))
Jeremie Fant (all things molecular and tied together)
i.e. an in-house production.
Primary Roads
FQI calculated from AIM
Cirsium scariosum
Macroinvertebrates.org
Solidago spathulata & Megachile wheeleri, by A. Litz
Five Astragali
Rhododendron sp. Hengduan Mtns., by Qin Li
Do the number of sequence reads reflect the amount of biological material in a sample?
FPNW 2nd
USFWS
workflow
Corbiculae Sample
a single species
SPATIAL SUBSET PICTURE
tissue from Rocky Mountain Herbarium
hyb-seq
Cirsium scariosum
Reclassification table
stuff
database
| Metric | Value | Metric | Value |
|---|---|---|---|
| Accuracy (Training) | 83.75 | F-Score | 0.84 |
| Accuracy (Test) | 84.00 | AUC | 0.92 |
| Recall | 81.03 | Concordance | 0.92 |
| True Neg. Rate | 86.97 | Discordance | 0.08 |
| Precision | 88.04 | Tied | 0.00 |
| ml | lm | |
|---|---|---|
| ensembles | 493 | 473 |
| true + | 362 | 286 |
| true - | 33 | 55 |
| false + | 64 | 41 |
| false - | 34 | 93 |
flower dates
flower dates
Species in Sequence DB
Three Initial Networks
| Condition | No. Class. | Prcnt. Class. | Total Seqs | Rank |
|---|---|---|---|---|
| A | 143 | 21.0 | 32.0 | Species |
| B | 205 | 30.1 | 10.5 | Species |
| C | 5 | 0.7 | 0.4 | Genus |
| G | 29 | 4.3 | 7.8 | Species |
| H | 280 | 41.2 | 47.9 | Genus |
| None met | 18 | 2.6 | 1.4 | Multiple |
Counted grains
less stuff
stuff
promising
Dani Selfie
Employment: Yingying Xie (NU), Josh Scholl (NU), Sam Isham (UM), Kelly McMillen (UM), Kay Hajek (UM), Linda Vance (UM), Cassandra Owen (SCC), Ken Holsinger (BLM)
Project: Nyree Zerega, Pat Herendeen, Hilary Noble, Zoe Diaz-Martinez, Angela McDonnell, Elena Loke, Ian Breckheimer, Ben Legler, Ernie Nelson, Charles (Rick) Williams, D. Knoke, L. Brummer, J. Boyd, C. Davidson, I. Gilman, M. Kirkpatrick, S. McCauley, J. Smith, K. Taylor, & C. Williams. David Giblin, Mare Nazaire, Sarah Burnett, Lauren Price, T.C.H. Cole, Eliot Gardner.